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Table 1 Plasmids used

From: Protease 3C of hepatitis A virus induces vacuolization of lysosomal/endosomal organelles and caspase-independent cell death

Plasmid

Description

Reference/Source

Vectors encoding organelle-targeted fluorescent proteins

pmKate2-lyso

encodes mKate2 N-terminally fused to rat Lamp-1

Evrogen (Russia)

pTagCFP-mito

encodes TagCFP N-terminally fused to mitochondrial targeting sequence derived from the subunit VIII of human cytochrome C oxidase

Evrogen (Russia)

pTagRFP-Golgi

encodes TagRFP N-terminally fused to Golgi targeting sequence of human β-1,4-galactosyltransferase

Evrogen (Russia)

pRab7-EYFPa

encodes Rab7 C-terminally fused to eYFP

[88]

pRab5-ECFPa

encodes Rab5 C-terminally fused to eCFP

[88]

pDsRed-Rab5/DNb

encodes dominant-negative Rab5/N133I N-terminally fused to DsRed

[134,135]/Add #13051g

pDsRed-Rab7/DNb

encodes Rab7/T22N N-terminally fused to DsRed

[134,135]/Add #12662g

pDsRed-Rab9b

encodes Rab9 N-terminally fused to DsRed

[134,135]/Add #12677g

pDsRed-Rab11b

encodes Rab11 N-terminally fused to DsRed

[134,135]/Add #12679g

pmRFP-LC3c

encodes autophagosome-specific LC3 protein N-terminally fused to mRFP

[136]/Add #21075g

pYFP-Rac1(N17)d

encodes Rac1/T17N N-terminally fused to fluorescent protein YFP

[137]/Add #11395g

pER-RFPe

encodes RFP N-terminally fused to CD5 leader sequence and C-terminally fused to SEKDEL amino acid sequence

[43]

Vectors for tet-off advanced expression system

pTet-Off Advanced

encodes the tetracycline-controlled transactivator protein tTA-Advanced

Clontech (USA)

pBI-EGFP

allows expression of a gene of interest and marker gene of eGFP under control of the bi-directional tTA-responsive promotor

Clontech (USA)

3Cpro gene source

pHAV3’f

bears a cDNA encoding a segment of human hepatitis A virus genome (strain HAS-15)

[138]/GenBank: X15463.1

3Cpro-expressing plasmids

pBI-EGFP/3C

encodes 3Cpro and eGFP under control of bi-directed tTA-responsive promotor.

This study

pBI-EGFP/3CMut

encodes 3Cpro with Cys172→Ala mutation and eGFP under control of bi-directed tTA-responsive promotor.

This study

  1. aGift from Prof. Ari Helenius (Institute of Biochemistry, Swiss Federal Institute of Technology, Zurich, Switzerland).
  2. bGift from Dr. Richard Pagano (Mayo Clinic, Rochester, MN, USA).
  3. cGift from Dr. Tamotsu Yoshimori (National Institute for Basic Biology, Okazaki, Japan).
  4. dGift from Dr. Joel Swanson (University of Michigan Medical School, MI, USA).
  5. eGift from Dr. Felipe X. Pimentel-Muiños (Centro de Investigation del Cancer, Universidad de Salamanca-CSIC, Salamanca, Spain).
  6. fGift from Dr. Eugene Snezhkov (M.M. Shemyakin and Yu.A Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia).
  7. gPlasmid was distributed through Addgene. Add #, Addgene plasmid number.