A novel link between the proteasome pathway and the signal transduction pathway of the Bone Morphogenetic Proteins (BMPs)
© Lin et al; licensee BioMed Central Ltd. 2002
Received: 11 April 2002
Accepted: 21 June 2002
Published: 21 June 2002
The intracellular signaling events of the Bone Morphogenetic Proteins (BMPs) involve the R-Smad family members Smad1, Smad5, Smad8 and the Co-Smad, Smad4. Smads are currently considered to be DNA-binding transcriptional modulators and shown to recruit the master transcriptional co-activator CBP/p300 for transcriptional activation. SNIP1 is a recently discovered novel repressor of CBP/p300. Currently, the detailed molecular mechanisms that allow R-Smads and Co-Smad to co-operatively modulate transcription events are not fully understood.
Here we report a novel physical and functional link between Smad1 and the 26S proteasome that contributes to Smad1- and Smad4-mediated transcriptional regulation. Smad1 forms a complex with a proteasome β subunit HsN3 and the ornithine decarboxylase antizyme (Az). The interaction is enhanced upon BMP type I receptor activation and occur prior to the incorporation of HsN3 into the mature 20S proteasome. Furthermore, BMPs trigger the translocation of Smad1, HsN3 and Az into the nucleus, where the novel CBP/p300 repressor protein SNIP1 is further recruited to Smad1/HsN3/Az complex and degraded in a Smad1-, Smad4- and Az-dependent fashion. The degradation of the CBP/p300 repressor SNIP1 is likely an essential step for Smad1-, Smad4-mediated transcriptional activation, since increased SNIP1 expression inhibits BMP-induced gene responses.
Our studies thus add two additional important functional partners of Smad1 into the signaling web of BMPs and also suggest a novel mechanism for Smad1 and Smad4 to co-modulate transcription via regulating proteasomal degradation of CBP/p300 repressor SNIP1.
The bone morphogenetic proteins (BMPs) form a subfamily of the Transforming Growth Factor β (TGF-β) superfamily [1–4]. Members of the BMP family were initially identified by their ability to induce ectopic bone formation . Functional characterization of BMPs and the cloning of new BMP family members have revealed that BMPs not only regulate bone formation and homeostasis but also function as morphogenetic factors for many other tissues and organs . The critical regulatory roles of BMPs during early embryogenesis, such as neurogenesis, mesoderm formation and patterning, are also well-recognized [1–3].
Like other members of the TGF-β superfamily, BMPs induce intracellular signaling via heteromeric complexes of the type I and type II serine-threonine kinase receptors [5, 6]. The Smad family proteins are now known to function as key signal transducers downstream of the TGF-β family type I receptors [6–8]. The activated BMP type I receptors directly recruit and phosphorylate a set of cytoplasmic Smad proteins that are specific for the BMP type I receptors. Three such BMP type I receptor-regulated Smads, Smad1, 5 and 8, have been identified . Among them, Smad1 has been studied most extensively. The phosphorylation of Smad1 at the carboxylterminal SSVS motif triggers the release of Smad1 from the receptor, the formation of homo-oligomers of Smad1 and hetero-oligomers of Smad1 and Smad4, and the subsequent nuclear translocation of both Smad1 and Smad4 [6, 9, 10]. In the nucleus, Smad1 and Smad4 function as DNA-binding transcriptional regulators . However, there is a unique feature in Smad-regulated transcription. Instead of independently binding to specific DNA sequence to regulate transcription, Smads are now considered to be transcriptional modulators since their ability to regulate transcription is dependent, in most cases, on their physical interaction with other nearby DNA-binding transcription factors. Thus, one of the fundamental questions in understanding Smad-regulated transcription is how Smads function as transcription modulators.
The transcriptional regulatory activities of Smad1 in the nucleus are associated with its ability to directly bind to DNA , its interaction with other DNA-binding transcription factors, such as OAZ, SIP1 and Hoxc-8 [13–15], and also its interaction with the master transcriptional co-activator CBP/p300 . Smad4 is an essential functional partner in Smad-regulated transcription and also interacts with CBP/p300 via a domain within the central linker region named as SAD (Smad Activation Domain) . Since CBP/p300 has intrinsic histone acetyltransferase (HAT) activity and participates in chromatin remodeling, the recruitment of CBP/p300 into the DNA-binding complexes of Smad1 and Smad4 is likely a critical step in Smad-regulated gene activation. However, our current knowledge of the molecular events involved in the recruitment of CBP/p300 and other transcriptional co-activators or co-repressors by Smads is still very limited. Furthermore, the molecular mechanisms underlying the cooperative functional partnership between Smad1 and Smad4 during transcriptional regulation is not yet understood.
Protein-protein interaction plays key roles in signal transduction. To gain further understanding of the signaling mechanisms of Smad1, we carried out a "blind" search for proteins that bind specifically to Smad1 using the yeast two-hybrid system. Characterization of these interactors reveals an unexpected physical and functional link between Smad1 and the proteasome-mediated degradation pathways. The 26S proteasome is responsible for the bulk turnover of cytoplasmic and nuclear proteins in eukaryotic cells and also plays a key role in the regulation of cell cycle, signal transduction, transcription as well as antigen presentation [17–21]. Most of the known proteasomal substrates are marked and targeted to proteasome by ubiquitination [17, 19, 20]. Ubiquitination, however, is not an obligatory step for substrate targeting to proteasome [17, 18, 20]. The degradation of the ornithine decarboxylase (ODC), the rate-limiting enzyme for polyamine synthesis, involves a protein named antizyme (Az), which binds and targets ODC to 26S proteasome for degradation . However, ODC has remained an "orphan" in Az-dependent proteasomal degradation.
Interestingly, both ubiquitin and Az were isolated from the yeast two-hybrid system as Smad1 interactors. Furthermore, an integral component of proteasome, HsN3 [22–24], which is a β subunit of the 20S catalytic core, was also isolated as a strong and specific Smad1 interactor. Functional characterization of the interaction between Smad1, Az and HsN3 in the signaling pathways of BMPs led us to find a novel functional link between Smad1 and proteasome-mediated degradation events, through which a novel CBP/p300 repressor, SNIP1 , is removed to allow the transcriptional activation of BMP-responsive genes.
The isolation of Smad1 interacting proteins reveals a physical interaction between Smad1 and components in proteasome-mediated degradation pathways
The identities of the thirteen interactors are summarized (Fig. 1B, top panel). We divided the interactors into three groups (Fig. 1B, top panel). The first group contains proteins that have a functional link to the degradation pathways of the 26S proteasome. They are: two ubiquitin precursors UBA80 (clone 1) and UBA52 (clone 21), the ornithine decarboxylase antizyme (Az) (clone 15) and the proteasome β subunit HsN3 (clone 18). The second group contains four known proteins: GST (clone 13), MBP-1 (c-Myc promoter Binding Protein, clone 14) , Smad1 (clone 17), TAG (Tumor Associated Gene, clone 31)  and PAG (Proliferation Associated Gene, clone 35) . The third group contains four novel proteins: clone 19, 12, 27 and 28, which we named as SNIP1, SIP2, SIP3 and SIP4, respectively. The functional characterization of clone 19 (SNIP1) as a novel CBP/p300 interactor and repressor has been reported recently in the signaling pathways of TGF-β . The functional characterization of clone 12 (SIP2) as a new member of the sorting nexin family member has also been reported . Studies of the novel protein SIP3 will be reported separately (Paralkar et al, manuscript in preparation).
We were intrigued by the fact that Smad1 binds to Ub, Az and HsN3, all of which are involved in proteasome-mediated degradation pathways, as illustrated in Fig. 1B, bottom panel. The well-known ubiquitin-dependent pathway involves the covalent attachment of ubiquitin to substrate proteins to form polyubiquitin chain, which then targets the marked substrates to proteasome for degradation [17, 19, 20]. The ubiquitin-independent pathway is not well defined, but involves targeting proteins other than ubiquitin. The best-characterized example of ubiquitin-independent degradation is the degradation of ornithine decarboxylase (ODC), which is dependent upon ODC interaction with the targeting protein antizyme (Az) . How ubiquitinated substrates or Az-bound ODC is recognized by the 26S proteasome is not well understood. HsN3 is a β subunit of the 20S core of the 26S proteasome and previously has also been implicated in targeting its interacting protein p105 subunit of NF-κB into the 26S proteasome [22–24, 32]. Thus, it is interesting that Smad1 can bind to two types of proteasome substrate-targeting proteins (ubiquitin and Az) as well as a proteasome component (HsN3) that has a possible substrate-targeting role. Studies were then carried out to further characterize Smad1 interaction with HsN3 and Az in mammalian cells and test a functional role of these interactions in the signaling pathways of BMPs as detailed below.
Smad1 interacts with prosequence-containing HsN3 but not processed HsN3 in the 20S proteasome and the activation of the BMP type I receptor enhances the interaction
To follow up the observed interaction between Smad1 and HsN3 in mammalian cells, we first constructed three HsN3 expression constructs. The first construct contains a Flag-epitope placed at the C-terminus of HsN3 (N3-F), since the C-terminus of HsN3 is not buried inside of the mature proteasome, according to the crystal structure of HsN3 . The second and the third constructs contain either the Flag or the T7 epitopes placed at the N-terminus of HsN3 (F-ΔN3, T7-ΔN3). Since the N-terminal prosequence of HsN3 is processed upon assembly into the 20S proteasome, we deleted the prosequence of HsN3 and replaced it with the Flag/T7-epitopes to assure that the epitopes will not be lost due to prosequence-processing. We first expressed these constructs into COS1 cells and examined their expression and assembly properties by immunoprecipitation of each expressed protein from metabolically labeled COS1 cells (Fig. 2C). Multiple endogenous proteins from COS1 cells were co-precipitated with Flag tagged wild type HsN3 (Fig. 2C, lane 2), while much few proteins were detected in the immunoprecipitates of the two deletion versions of HsN3 lacking the prosequence (Fig. 2C, lanes 3 & 4). The predominant band in the immunoprecipitation of wild type HsN3 is the prosequence-containing HsN3 (Pro-N3-F), as indicated by its molecular weight and the ability of anti-Flag antibody to detect it in a parallel Western blot. The other predominant band immediately below Pro-N3-F is the mature form of Pro-N3-F, as indicated by the ability of this band to be also detected by anti-Flag on the Western blot and by its co-migration with the deletion version of N3 lacking the prosequence (F-ΔN3 in lane 3). The rest of the proteins detected in the immunoprecipitates of wild type full length HsN3 (Fig. 2C, lane 2) are predominantly different subunits of the 20S proteasome and 19S regulators, as indicated by their molecular weights and their ability to be recognized by anti-20S and anti-19S antibodies (data not shown). The lack of most of these endogenous proteasome components in the immunoprecipitates of the two deletion version of HsN3 whose prosequences have been artificially removed via deletions indicates that the prosequence of HsN3 is also important for its successful assembly into the mature 20S proteasome. The slight different band patterns detected in the immunoprecipitates of F-ΔN3 and T7-ΔN3 suggests that different epitope tags may influence N3 interaction with endogenous proteasome components. Since mature β subunits are only found in the 20S proteasome , the detection of the mature form of the Flag-tagged HsN3 assured us that the exogenous Flag-tagged HsN3 proteins are normal in their ability to be incorporated into the 20S proteasome.
To test whether the observed interaction between Smad1 and Pro-N3-F, the pre-assembled form of HsN3, is regulated by BMP type I receptor activation, we co-expressed Smad1 and HsN3 with a mutant type I receptor, ALK3Q233D. ALK3Q233D is constitutively active in inducing downstream signaling events in the absence of BMPs or the type II receptor . The co-expression of ALK3Q233D with Smad1 and HsN3 significantly increased the amount of the pre-assembled HsN3 that was co-precipitated with Smad1 (Fig. 3B, right panel, compare lanes 2 & 3). Smad1 was also detected in the immunoprecipitates of HsN3 (Fig. 3B, lanes 2 & 3). Since equal transfection efficiency was monitored and equal total proteins were used for the immunoprecipitation, the increased signals of pro-N3-F and its associated proteins in Fig. 3B, lane 3, left panel, may reflect an increased stability of HsN3 due to complex formation with Smad1, upon BMP receptor activation.
Smad1 can interact with prosequence-deleted HsN3 in HsN3 assembly intermediates
The lack of mature HsN3 and other proteasome components in the immunoprecipitates of Smad1 could be mediated by two different mechanisms. First, the prosequence of HsN3, which is processed from the mature HsN3, is necessary for Smad1 to bind to HsN3. Second, the final maturation of the 20S proteasome resulted from the assembly of two half proteasomes into the four stacked ring structure could trap the already bound Smad1 inside the proteasome for rapid degradation or lead to the dissociation of Smad1 from mature 20S proteasome due to the inaccessibility of Smad1 binding site on the incorporated HsN3. We first tested the role of the prosequence of HsN3 in binding to Smad1. As shown in Fig. 4C, artificial removal of the prosequence of HsN3 (ΔN3) did not abolish Smad1 binding to HsN3. In fact, the interaction between ΔN3 and Smad1 was even stronger when directly compared with the interaction between wild type HsN3 and Smad1 (data not shown). Thus, HsN3 does not require the prosequence to bind Smad1. Since we have shown that artificial removal of the prosequence of HsN3 leads to a blockage of the normal assembly of HsN3 into the mature proteasome (Fig. 2C), we suspect that the detected strong signals of ΔN3 from Smad1 immunoprecipitates reflect the accumulated HsN3 within the defective assembly intermediates, as illustrated in Fig. 2B. To test this possibility, we directly compared the ability of Smad1 MH2 domain to bind wild type HsN3 and prosequence-less mutant HsN3 in metabolically labeled COS 1 cells (Fig. 4D &4E). When COS1 cells were expressing wild type HsN3, only the Pro-N3-F was detected in the immunoprecipitates of Smad1MH2 (Fig. 4D, lane 4). When COS1 cells were expressing the mutant HsN3 lacking the prosequence, the mutant N3 (ΔN3) and ΔN3 associated endogenous proteins were detected in the immunoprecipitates of Smad1MH2 (Fig. 4E, lane 4). In addition, four distinct small molecular weight proteins with unknown identity were also recruited into the ΔN3/MH2-containing complex (Fig. 4E, lane 2 and lane 4). These four bands were specifically detected only when Smad1MH2 and ΔN3 were co-expressed. When Smad1MH2 was replaced with full length Smad1, the ΔN3-containing complex was also detected in the immunoprecipitates of Smad1 (Fig. 4F). Thus, a blockage of HsN3 assembly resulted from deleting the prosequence of HsN3 allows the detection of a stable complex between Smad1 and HsN3 assembly intermediates. These data suggest that Smad1 interacts with HsN3 transiently when HsN3 is either in single Pro-HsN3 form, or in Pro-HsN3 assembly intermediates. The lack of mature HsN3 in Smad1 immunoprecipitates does not reflect the inability of Smad1 to bind prosequence-less HsN3, but is likely due to either the trapping/degradation of Smad1 inside of the proteasome, or the rapid dissociation of Smad1 from HsN3. The degradation of Smad1 by proteasome is reported in a separate study . The dissociation of Smad1 from the mature 20S proteasome could be due to the competition of Smad1 binding by a 19S regulator protein or simply due to the inaccessibility of the binding site on HsN3 when two half proteasomes assembly into the mature proteasome.
Two separate domains on Az mediate interaction with Smad1 and HsN3 prior to HsN3 incorporation into the 20S proteasome
The Activation of the BMP type I receptor induces Smad1-dependent nuclear translocation of both HsN3 and Az
We further tested the role of Smad1 in the nuclear translocation of HsN3. HsN3 was detected in speckled pattern throughout the cytoplasm and the nucleus when it was expressed alone in COS1 cells (Fig. 6D, panel 1). Similar localization pattern was detected when HsN3 was co-expressed with Smad1 (Fig. 6D, panel 2) or with ALK3Q233D (Fig. 6D, panel 3). However, when HsN3 was co-expressed with both Smad1 and ALK3Q233D, the majority of HsN3 signals were detected in the nucleus (Fig. 6D, panel 4). Thus, the nuclear translocation of HsN3 is dependent upon both the receptor activation and the presence of Smad1. Similarly, the localization of Az is also dependent upon the co-expression of Smad1 and the activated BMP type I receptor (Fig. 6E, panels 1–4). When Smad1 was replaced by Smad2, Az was found in both the cytoplasm and the nucleus upon the co-expression of ALK3Q233D (Fig. 6E, panel 4), although cytoplasmic signals of Az were slightly decreased. This could be due to the presence of endogenous Smad1 in COS1 cells.
Thus, the localization of both Az and HsN3 is regulated by the BMP type I receptor in a Smad1-dependent manner. This data confirms the physical interaction between Smad1, HsN3 and Az detected by immunoprecipitation and further suggests that the cytoplasmic Smad1 forms a complex with Az and HsN3 and brings these two proteins into the nucleus upon the activation of BMP type I receptor.
The novel CBP/p300 repressor SNIP1 is recruited to Az upon the activation of BMP type I receptor
The observed physical interaction between Smad1, HsN3 and Az and the regulation of the complex formation by BMPs suggests a functional role of Az and HsN3 in the signaling function of Smad1. In a separate study, we have shown that Az and HsN3 play targeting roles in the proteasomal degradation of Smad1 upon the activation of BMP type I receptors . The observed proteasomal degradation of Smad1 upon the activation of BMP signaling could simply serve to irreversibly terminate Smad1-mediated signaling pathways of BMPs. However, we observed that Az and HsN3 also interact with several isolated Smad1 interactors. Furthermore, the nuclear co-translocation of Az and HsN3 with Smad1 also suggests potential proteasomal targeting role of Az and HsN3 in the nucleus. Thus, we tested the hypothesis that Az and HsN3 also target Smad1 interacting proteins in the nucleus.
Thus, in the mammalian overexpression system, the pre-assembled HsN3 exhibits constitutive interaction with SNIP1, whereas Az is only recruited to SNIP1 upon receptor activation. The lack of strong signals of Smad1 or Smad4 in the immunoprecipitates of SNIP1 in the presence of BMP type I receptor activation may be due to the transient nature of the complex, which, as shown below, is targeted to proteasome for degradation.
BMP type I receptor activation induces SNIP1 degradation that is regulated by Smad1, Smad4 and Az
We noted that the protein levels of Smad1, Smad4 and Az were co-regulated with that of SNIP1. For example, the protein levels of Smad1, Smad4 and Az were all sensitive to lactacystin (Fig. 8A, all panels, compare lane 2 and lane 3). Blocking SNIP1 degradation was accompanied by increased protein levels of Smad1, Smad4 and Az in cells expressing the activated ALK3 (Fig. 8A, lanes 5, 7, 9, 11). The lower levels of Smad1, Smad4, Az and SNIP1 in lane 1 compared with those in lane 10 suggest that the leaky signaling by the overexpressed ALK3, which we have demonstrated recently , caused a constitutive reduction of Smad4, Az and SNIP1 level that is dependent upon the activation of Smad1. These data thus suggest that SNIP1 is targeted to proteasome for degradation together with Smad1, Az and Smad4.
The ability of Smad1 in regulating SNIP1 degradation was further demonstrated by increased expression of Smad1 in COS1 cells that were transfected with a constant amount of Smad4, Az, ALK3Q233D and SNIP1 (Fig. 8B). A dose-dependent effect of Smad1 on receptor-induced degradation of SNIP1 was observed (Fig. 8B, compare lanes 1 & 2 with lanes 5 & 6).
To confirm SNIP1 degradation in non-overexpression systems, we monitored the steady state levels of endogenous SNIP1 in the human keratinocyte HaCaT and mouse myoblast L6. Cells were treated with BMP7 for different periods of time. Western blot analyses using an anti-SNIP1 antibody detected two forms of SNIP1 with slightly different mobility, which are named as SNIP1.A and SNIP1.B (Fig. 8C, top panel). The IOD of each form of SNIP1 as well as the total IOD of both forms are plotted (Fig. 8C, right panel). In HaCaT cells, the protein levels of both forms of SNIP1 were significantly decreased after 3 hrs of BMP7 treatment and were almost diminished by 22 hrs. Interestingly, a different response was observed in L6 cells. The levels of SNIP1 were somewhat increased after 3 hrs and peaked at 3.5 hrs, but then started to decline at 7 hrs and were diminished at 22 hrs.
SNIP1 is a nuclear repressor of the BMP-induced transcription responses
The bone morphogenetic proteins (BMPs) are multi-functional regulators of early embryogenesis and tissue/organ morphogenesis. Observations made in the past several years suggest that a subset of Smad family proteins play key roles in transmitting the signals of BMPs from the activated receptors at the cell surface to the nucleus to regulate gene expression. Smad1, as one of the three known R-Smads of BMPs, has been extensively studied within the scope of its phosphorylation, interaction with Smad4, nuclear translocation, DNA binding and protein-protein interactions related to its function as a transcriptional regulator. Currently, Smad1 is regarded as a DNA-binding transcriptional modulator that is activated by the BMP type I receptors. Considering the sophisticated mode of regulation characteristic of the TGF-β/BMP family ligands, it is expected that that signaling mechanisms of Smads should have a nature of complexity that can accommodate the vast biological functions of these regulators. We took a discovery-driven approach to study the signaling mechanism of Smad1, by systematically searching for proteins that can physically interact with Smad1. Such an approach led to the identification of a set of proteins that can specifically bind to Smad1. This report has focused upon the functional characterization of two proteins that function along the degradation pathways of the 26S proteasome: antizyme (Az) and HsN3.
Az was previously identified as a polyamine-inducible factor that binds and targets the ornithine decarboxylase (ODC) to proteasome for degradation [18, 45]. Until now, ODC is the only protein known to be targeted by Az to proteasome, although the existence of additional proteins targeted by Az to proteasome has been suspected . We now find two new Az interactors: Smad1, the key signal transducer of BMPs, as well as SNIP1, the nuclear repressor of CBP/p300. In a separate study, we demonstrated that Smad1 is targeted to proteasome for degradation, a process involving the co-targeting role of Az and HsN3 . Here we showed that SNIP1, after being recruited to Az, is targeted, together with Smad1, to proteasome for degradation. These data indicate that Az has a more general role in targeting different substrates to proteasome for degradation. However, unlike the known ability of Az to bind ODC constitutively, the interaction between SNIP1 and Az is dependent upon the activation of BMP type I receptor and occurs in the presence of Smad1 and Smad4. This suggests the existence of a novel BMP-regulated "conditional" targeting activity of Az that is distinct from the constitutive targeting activity of Az towards ODC.
We have so far identified two functional outcomes of the observed physical interaction between Smad1, HsN3 and Az in the signaling pathways of BMPs. First, in a separate report, we showed that Smad1 itself is targeted to proteasome and is subsequently degraded by the proteasome, an event that is triggered by the activation of BMP type I receptor and involves the targeting role of Az and HsN3 . Proteasomal degradation of Smad1 appears to also play a role in regulating the constitutive level of Smad1 in cell as a way to adjust the cellular responsiveness of BMPs . However, the targeting mechanism and the regulation involved in these two cases of Smad1 degradation by proteasome are likely fundamentally different . The second functional outcome of the physical link between Smad1, HsN3 and Az is the ability of Smad1 to regulate the proteasomal degradation of SNIP1, which is clearly dependent upon high levels of Smad1, Az and a strong activation signal from the type I receptor, as suggested by the observations that the protein levels of Smad1, Az and ALK3Q233D directly influence the degree of SNIP1 degradation. While the detailed mechanisms for such a novel mode of regulation still requires many additional studies, so far we observed several important steps that may contribute to SNIP1 degradation. First, Smad1 binds both HsN3 and Az in the cytoplasm and brings them into the nucleus upon the activation of BMP type I receptor (Fig. 6). Second, SNIP1 is recruited to Az and HsN3, which are likely in a complex with Smad1 and Smad4 (Fig. 7D &7E). Third, SNIP1 is co-targeted into the proteasome with Smad1, Smad4 and Az via the rapid assembly of HsN3 into the proteasome. This is suggested by the observations that the targeting of SNIP1 is positively regulated by Smad1 level and is dependent upon Smad1, Smad4 and Az (Fig. 8A &8B). Fourth, Smad4 is a positive regulator of the targeting of SNIP1 to proteasome. The requirement of both Smad1 and Smad4 in the down-regulation of SNIP1 is interesting since this may represent an important molecular mechanism for the co-operative property of these Smads to modulate transcription. The functional significance of SNIP1 degradation is apparent, since SNIP1 is a constitutive interactor and functional repressor of the master transcription co-activator CBP/p300 . In the BMP signaling pathways, SNIP1 is a potent inhibitor of Smad-responsive genes via inhibiting CBP/p300 (Fig. 9A). Thus the down-regulation of SNIP1 likely leads to the liberation of CBP/p300 and directly contributes to the well-known transcriptional modulator functions of Smad1 and Smad4. These ideas are summarized in a cartoon in Fig. 10B. Specifically, the activated Smad1 and Smad4 enter the nucleus, where Smad1 and Smad4 together recruit SNIP1 and CBP/p300. The inhibition of SNIP1 on CBP/p300 is considered to act through its interaction with the C/H1 domain of CBP/p300, thereby blocking the recruitment of CBP/p300 by other transcription factors including Smad4 . Such an inhibition is counteracted by the ability of Smad4 to compete off SNIP1 from CBP/p300 . So at early phase of Smad activation, although SNIP1 is still bound to Smad1 and Smad4, it is no longer directly bound to CBP/p300, which now can activate transcription. Our data suggested that the Smad1/Smad4 bound SNIP1 can be further targeted to proteasome for degradation. Smad1 and Smad4 are indeed both degraded. However, we propose that such degradation is coupled to the recruitment of the SNIP1-free CBP/p300 to a nearby DNA-binding transcription factor, thus carrying out the commonly observed role of Smads as transcriptional co-modulators. Smads have been shown to mediate transcription via modulating the transcriptional activity of many other DNA-binding proteins. The ability of Smad1 and Smad4 to target SNIP1 for degradation, thereby freeing CBP/p300 for other transcriptional factors is likely an important mechanism for the transcriptional modulator role of these two Smads.
We have observed that several other Smad1 interactors, including some cytoplasmic interactors of Smad1, are also degraded by proteasome (Wang et al., unpublished data). Thus, the location for the targeting of Smad1 may not be limited to only inside of the nucleus, as illustrated in Fig. 10B. Future studies are needed to verify and enrich the details of the illustrated molecular events.
The subject of proteasomal degradation of Smads and Smad interacting proteins has now become a major focus of interest in the field due to its broad implication in signaling regulation and execution. The work reported here represents our major efforts during the past several years to follow a novel concept of proteasomal degradation in TGF-β/BMP signaling based upon the yeast two-hybrid data obtained in 1996. Although there are multiple reports on proteasomal degradation of Smads and Smad interacting proteins, primarily in TGF-β signaling pathways [47–54], our observations reported here are entirely based upon our own original observations and show a novel connection of Smads with the proteasome system that no other groups have reported. Our observations provide new revenues for future understanding of the functional mechanisms of Smads, which are likely not limited to transcriptional regulation but are quite extensively linked to the regulation of proteasomal degradation of multiple cytoplasmic and nuclear proteins.
Materials and Methods
Construction of expression plasmids
For the yeast two-hybrid screen, full-length Smad1 was subcloned into BamH1/Not1 sites of PEG202 by a PCR method, resulting in the inframe fusion between the LexA DNA binding domain (1–202) and Smad1. The Smad1 (G419S) mutant was a kind gift from J. Wrana . The subcloning of Smad1 (G419S), Smad1NL (1–271), Smad1L (147–271) into pEG202 were all carried out similarly by the PCR approach. The mammalian expression constructs of Smad1 and its deletion mutant Smad1C (271–465) were made by subcloning Smad1 into two modified pCMV6 vectors, which have either the Flag epitope (F-pCMV6) or the T7 epitope (T7-pCMV6) placed upstream of an array of new multiple cloning sites. T7-ΔN3 pCMV6 was made by PCR amplification of HsN3 (a.a. 45–263) followed by subcloning the PCR products into the EcoR1/Xho1 sites of the modified T7-pCMV6 vector. N3-F pCMV6 was made by PCR amplification of HsN3 (1–263) followed by subcloning the PCR products into the EcoR1/EcoRV sites of pFlag-CMV5C vector (Kodak). The fidelity of the PCR products was determined by DNA sequencing. The constitutively active mutant BMP type I receptor (ALK3Q233D) is a gift from J. Massagué; Tlx-2 reporter is from J. Wrana; full length rat Az is from P. Coffino.
Yeast two-hybrid screen and tests
A modified yeast two-hybrid system developed by Brent and colleagues [26, 27]. was used to isolate Smad1 interactors. Briefly, yeast strain EGY48 (leu2, his3, trp1, ura3), which has an integrated Leu2 reporter, was first transformed with a LexAop-LacZ reporter. The selected transformants were transformed again with the bait construct Smad1pEG202. The selected bait transformants were transformed with a human fetal brain cDNA library (a gift from Roger Brent). About one million original transformants were obtained. From the pooled stock of the transformants, ten million cells were screened on U-H-W-L- galactose plates containing X-Gal (5-bromo-4-chloro-3-indolyl-β-D-galactosidase). Only those that form blue colonies were picked as candidate positives. The cDNAs from the candidate positives were purified, re-tested for Smad1 interaction in yeast, and then sequenced. For testing protein-protein interaction using the yeast two-hybrid system, the same yeast strain was first transformed with the LexA-fusion construct, selected on U-H- plates, then re-transformed with B42-fusion constructs, and selected on U-H-W- plates. The transformants were first streaked onto a master plate, then replicated onto two testing plates: U-H-W- glucose plate with X-Gal and U-H-W- galactose/raffinose plate with X-Gal. For presentation, yeast transformants were also directly streaked onto U-H-W- galactose/raffinose plate with X-Gal, after confirming lack of the auto-activation on glucose plates.
Transient transfection, 35S-metabolic labeling, immunoprecipitation and western blot
Equal amount of total plasmids were used to transiently transfect COS-1 using the DEAE dextran method . A GFP construct was used to monitor the transfection efficiency. 293 cells were transfected by the standard CaPO4 procedure  and cells were harvested 24 hrs after tansfection. For metabolic labeling, cells were incubated with 250 μCi 35S-methionine per plate for 4 hrs, two days after transfection. To make lysates, transfected cells were washed with cold HBSS, scraped, lysed on ice in 300 μl lysis buffer (20 mM Tris, PH 7.4, 150 mM NaCl, and 0.5% Triton X-100, 1mM EDTA) containing protease inhibitors. Protein expression level was determined by Western blot analyses of 20 μl lysates before any immunoprecipitation assays. For immunoprecipitation, 150 μl cell lysates were pre-cleaned by protein A sepharose beads (Pharmacia), incubated with 3 μl of anti-T7 (1 mg/ml) or anti-Flag (3 mg/ml) (M2 monoclonal, IBI, Eastman Kodak) on ice overnight. Protein A (for anti-T7) and protein G (for anti-Flag) sepharose beads were used to absorb the antibodies. After washing, beads were treated with protein sample buffer to elute immunoprecipitates. Eluted proteins were separated on SDS-PAGE. The detection of the co-precipitated proteins was carried out either by autoradiography, if proteins were metabolically labeled or by Western blot using the ECL kit. When proteasome inhibitors were applied, the inhibitors LLnL (50 mM in DMSO) or lactacystin (10 mM in H2O) were added directly to the cell medium at 1:1000 dilutions. Lactacystin was purchased from E. J. Corey laboratory at Harvard University. LLnL was purchased from Sigma.
Immunocytochemistry and confocal microscopy
Immunocytochemistry was carried out as described previously . Briefly, COS cells were grown to 50% confluency on gelatin-coated glass cover slips. Cells were transiently transfected with the indicated plasmids (total 10 μg) using the DEAE dextran method. About 48 hrs after transfection, cells were fixed in 4% paraformaldehyde for 10 min, and then permeablized with methanol for 2 mins. Cells were blocked in 10% goat serum/PBS for 1 hr at room temperature, before the sequential incubation with the primary and secondary antibodies. The monoclonal anti-HsN3 (MCP444) is a gift from K. B. Hendil. The polyclonal anti-Smad1 antibody is a gift from A. Roberts. The secondary antibodies were either FITC-conjugated, or Rodamine-conjugated goat anti-mouse IgG (Jackson ImmunoResearch, Westgrove PA).
Confocal Microscopy was carried out on a Leica TCS 4D Confocal Laser Scanning Microscope at the Schepens Eye Research Institute (Boston MA).
P19 cells were seeded in 100 mm dish and cultured for 24 hrs before they were transfected with luciferase reporter constructs using Fugene Kit (Roche). Each group of transfected cells was re-seeded into eight separate wells in a 24-well plate 18 hrs after transfection. Eighteen hrs after re-seeding, cells were washed twice with 1 ml serum-free media and left in 200 μl media. Four out of eight dishes of each group were exposed to BMP7 (25 ng/ml BMP7), which was directly added into the media for 24 hrs. Culture media was then removed and 100 μl of Reporter Lysis Buffer (Promega 5X stock, diluted with H2O) was added to the cells, which were then frozen at -80°C for 3 hrs. The plates were thawed and 70 μl of supernatant was transferred to luciferase plates, mixed with 70 μl of luciferase reagent (Promega). The luciferase activity was detected on Wallac Victor 1420 plate reader. To normalize data, cells were also transfected with β-Gal reporter and the β-galactosidase activities measured using the Galacto-star kit (Tropix, BM300S).
We thank P. Andriesse and S. Guedes for technical art work; J. Farley, P. Danielson for technical assistance, J. Massagué for ALK3Q233D and BMPRII constructs; C. Heldin for ALK3 construct; J. Wrana for constructs of Smad1 (G419S), Smad2, Tlx-2-Lux, GAL4-Smad1 and GAL4-Lux constructs; R. Derynck for Smad3 construct; A. Roberts for Smad1 construct and polyclonal anti-Smad1; P. Coffino for cDNAs of Az and ODC; E.J. Corey for lactacystin; K. Sampath at the Creative BioMolecule Inc. for BMP7; The Genetic Institute Inc. for BMP2; K.B. Hendil for anti-HsN3; and R. Brent and A. Zervos for the "Protein Trap" system and the brain cDNA library.
- Harland RM: The transforming growth factor beta family and induction of the vertebrate mesoderm: bone morphogenetic proteins are ventral inducers [comment]. Proc Natl Acad Sci U S A. 1994, 91: 10243-10246.PubMed CentralView ArticlePubMedGoogle Scholar
- Hogan BL: Bone morphogenetic proteins: multifunctional regulators of vertebrate development. Genes Dev. 1996, 10: 1580-1594.View ArticlePubMedGoogle Scholar
- Kingsley DM: The TGF-beta superfamily: new members, new receptors, and new genetic tests of function in different organisms. Genes Dev. 1994, 8: 133-146.View ArticlePubMedGoogle Scholar
- Reddi AH: Regulation of cartilage and bone differentiation by bone morphogenetic proteins. Curr Opin Cell Biol. 1992, 4: 850-855.View ArticlePubMedGoogle Scholar
- Kawabata M, Imamura T, Miyazono K: Signal transduction by bone morphogenetic proteins. Cytokine Growth Factor Rev. 1998, 9: 49-61. 10.1016/S1359-6101(97)00036-1.View ArticlePubMedGoogle Scholar
- Massague J: TGF-beta signal transduction. Annu Rev Biochem. 1998, 67: 753-791. 10.1146/annurev.biochem.67.1.753.View ArticlePubMedGoogle Scholar
- Wrana JL: Regulation of Smad activity. Cell. 2000, 100: 189-192.View ArticlePubMedGoogle Scholar
- Zhang Y, Derynck R: Regulation of Smad signalling by protein associations and signalling crosstalk. Trends Cell Biol. 1999, 9: 274-279. 10.1016/S0962-8924(99)01579-2.View ArticlePubMedGoogle Scholar
- Kawabata M, Inoue H, Hanyu A, Imamura T, Miyazono K: Smad proteins exist as monomers in vivo and undergo homo- and hetero-oligomerization upon activation by serine/threonine kinase receptors. EMBO J. 1998, 17: 4056-4065. 10.1093/emboj/17.14.4056.PubMed CentralView ArticlePubMedGoogle Scholar
- Massague J, Chen YG: Controlling TGF-beta signaling. Genes Dev. 2000, 14: 627-644.PubMedGoogle Scholar
- Attisano L, Wrana JL: Smads as transcriptional co-modulators. Curr Opin Cell Biol. 2000, 12: 235-243. 10.1016/S0955-0674(99)00081-2.View ArticlePubMedGoogle Scholar
- Kim J, Johnson K, Chen HJ, Carroll S, Laughon A: Drosophila Mad binds to DNA and directly mediates activation of vestigial by Decapentaplegic. Nature. 1997, 388: 304-308. 10.1038/40906.View ArticlePubMedGoogle Scholar
- de Caestecker MP, Yahata T, Wang D, Parks WT, Huang S, Hill CS: The Smad4 activation domain (SAD) is a proline-rich, p300-dependent transcriptional activation domain. J Biol Chem. 2000, 275: 2115-2122. 10.1074/jbc.275.3.2115.View ArticlePubMedGoogle Scholar
- Verschueren K, Remacle JE, Collart C, Kraft H, Baker BS, Tylzanowski P: SIP1, a novel zinc finger/homeodomain repressor, interacts with Smad proteins and binds to 5'-CACCT sequences in candidate target genes. J Biol Chem. 1999, 274: 20489-20498. 10.1074/jbc.274.29.20489.View ArticlePubMedGoogle Scholar
- Shi X, Yang X, Chen D, Chang Z, Cao X: Smad1 interacts with homeobox DNA-binding proteins in bone morphogenetic protein signaling. J Biol Chem. 1999, 274: 13711-13717. 10.1074/jbc.274.19.13711.View ArticlePubMedGoogle Scholar
- Nakashima K, Yanagisawa M, Arakawa H, Kimura N, Hisatsune T, Kawabata M: Synergistic signaling in fetal brain by STAT3-Smad1 complex bridged by p300 [see comments]. Science. 1999, 284: 479-482. 10.1126/science.284.5413.479.View ArticlePubMedGoogle Scholar
- Coux O, Tanaka K, Goldberg AL: Structure and functions of the 20S and 26S proteasomes. Annu Rev Biochem. 1996, 65: 801-847. 10.1146/annurev.biochem.65.1.801.View ArticlePubMedGoogle Scholar
- Hayashi S, Murakami Y, Matsufuji S: Ornithine decarboxylase antizyme: a novel type of regulatory protein. Trends Biochem Sci. 1996, 21: 27-30. 10.1016/0968-0004(96)80882-6.View ArticlePubMedGoogle Scholar
- Chen P, Hochstrasser M: Autocatalytic subunit processing couples active site formation in the 20S proteasome to completion of assembly. Cell. 1996, 86: 961-972.View ArticlePubMedGoogle Scholar
- Pickart CM: Targeting of substrates to the 26S proteasome. FASEB J. 1997, 11: 1055-1066.PubMedGoogle Scholar
- Tanaka K, Chiba T: The proteasome: a protein-destroying machine. Genes Cells. 1998, 3: 499-510. 10.1046/j.1365-2443.1998.00207.x.View ArticlePubMedGoogle Scholar
- Cruz M, Nandi D, Hendil KB, Monaco JJ: Cloning and characterization of mouse Lmp3 cDNA, encoding a proteasome beta subunit. Gene. 1997, 190: 251-256. 10.1016/S0378-1119(97)00003-6.View ArticlePubMedGoogle Scholar
- Kopp F, Kristensen P, Hendil KB, Johnsen A, Sobek A, Dahlmann B: The human proteasome subunit HsN3 is located in the inner rings of the complex dimer. J Mol Biol. 1995, 248: 264-272. 10.1006/jmbi.1995.0220.PubMedGoogle Scholar
- Thomson S, Rivett AJ: Processing of N3, a mammalian proteasome beta-type subunit. Biochem J. 1996, 315 (Pt 3): 733-738.PubMed CentralView ArticlePubMedGoogle Scholar
- Kim RH, Wang D, Tsang M, Martin J, Huff C, de Caestecker MP: A novel smad nuclear interacting protein, SNIP1, suppresses p300-dependent TGF-beta signal transduction. Genes Dev. 2000, 14: 1605-1616.PubMed CentralPubMedGoogle Scholar
- Brent R, Finley RL: Understanding gene and allele function with two-hybrid methods. Annu Rev Genet. 1997, 31: 663-704. 10.1146/annurev.genet.31.1.663.View ArticlePubMedGoogle Scholar
- Zervos AS, Gyuris J, Brent R: Mxi1, a protein that specifically interacts with Max to bind Myc-Max recognition sites [published erratum appears in Cell 1994 Oct 21;79(2):following 388]. Cell. 1993, 72: 223-232.View ArticlePubMedGoogle Scholar
- Ray R, Miller DM: Cloning and characterization of a human c-myc promoter-binding protein. Mol Cell Biol. 1991, 11: 2154-2161.PubMed CentralView ArticlePubMedGoogle Scholar
- Gross B, Gaestel M, Bohm H, Bielka H: cDNA sequence coding for a translationally controlled human tumor protein. Nucleic Acids Res. 1989, 17: 8367-PubMed CentralView ArticlePubMedGoogle Scholar
- Prosperi MT, Ferbus D, Karczinski I, Goubin G: A human cDNA corresponding to a gene overexpressed during cell proliferation encodes a product sharing homology with amoebic and bacterial proteins. J Biol Chem. 1993, 268: 11050-11056.PubMedGoogle Scholar
- Parks WT, Frank DB, Huff C, Renfrew HC, Martin J, Meng X: Sorting Nexin 6, a Novel SNX, Interacts with the Transforming Growth Factor-beta Family of Receptor Serine-Threonine Kinases. J Biol Chem. 2001, 276: 19332-19339. 10.1074/jbc.M100606200.View ArticlePubMedGoogle Scholar
- Rousset R, Desbois C, Bantignies F, Jalinot P: Effects on NF-kappa B1/p105 processing of the interaction between the HTLV-1 transactivator Tax and the proteasome. Nature. 1996, 381: 328-331. 10.1038/381328a0.View ArticlePubMedGoogle Scholar
- Frentzel S, Pesold-Hurt B, Seelig A, Kloetzel PM: 20 S proteasomes are assembled via distinct precursor complexes. Processing of LMP2 and LMP7 proproteins takes place in 13–16 S preproteasome complexes. J Mol Biol. 1994, 236: 975-981.View ArticlePubMedGoogle Scholar
- Nandi D, Woodward E, Ginsburg DB, Monaco JJ: Intermediates in the formation of mouse 20S proteasomes: implications for the assembly of precursor beta subunits. EMBO J. 1997, 16: 5363-5375. 10.1093/emboj/16.17.5363.PubMed CentralView ArticlePubMedGoogle Scholar
- Schmidt M, Schmidtke G, Kloetzel PM: Structure and structure formation of the 20S proteasome. Mol Biol Rep. 1997, 24: 103-112. 10.1023/A:1006826725056.View ArticlePubMedGoogle Scholar
- Schmidtke G, Schmidt M, Kloetzel PM: Maturation of mammalian 20 S proteasome: purification and characterization of 13 S and 16 S proteasome precursor complexes. J Mol Biol. 1997, 268: 95-106. 10.1006/jmbi.1997.0947.View ArticlePubMedGoogle Scholar
- Kruger E, Kloetzel P, Enenkel C: 20S proteasome biogenesis. Biochimie. 2001, 83: 289-293. 10.1016/S0300-9084(01)01241-X.View ArticlePubMedGoogle Scholar
- Groll M, Ditzel L, Lowe J, Stock D, Bochtler M, Bartunik HD: Structure of 20S proteasome from yeast at 2.4 A resolution [see comments]. Nature. 1997, 386: 463-471. 10.1038/386463a0.View ArticlePubMedGoogle Scholar
- Gruendler C, Lin Y, Farley J, Wang T: Proteasomal degradation of Smad1 induced by bone morphogenetic proteins. J Biol Chem. 2001, 276: 46533-46543. 10.1074/jbc.M105500200.View ArticlePubMedGoogle Scholar
- Hoodless PA, Haerry T, Abdollah S, Stapleton M, O'Connor MB, Attisano L: MADR1, a MAD-related protein that functions in BMP2 signaling pathways. Cell. 1996, 85: 489-500.View ArticlePubMedGoogle Scholar
- Macias-Silva M, Hoodless PA, Tang SJ, Buchwald M, Wrana JL: Specific activation of Smad1 signaling pathways by the BMP7 type I receptor, ALK2. J Biol Chem. 1998, 273: 25628-25636. 10.1074/jbc.273.40.25628.View ArticlePubMedGoogle Scholar
- Liu F, Hata A, Baker JC, Doody J, Carcamo J, Harland RM: A human Mad protein acting as a BMP-regulated transcriptional activator [see comments]. Nature. 1996, 381: 620-623. 10.1038/381620a0.View ArticlePubMedGoogle Scholar
- Hayashi H, Abdollah S, Qiu Y, Cai J, Xu YY, Grinnell BW: The MAD-related protein Smad7 associates with the TGFbeta receptor and functions as an antagonist of TGFbeta signaling. Cell. 1997, 89: 1165-1173.View ArticlePubMedGoogle Scholar
- Guo X, Lin Y, Horbinski C, Drahushuk KM, Kim I-J, Kaplan PL, Lein P, Wang T, Higgins D: J Neurobiology. 2001, 48: 120-130. 10.1002/neu.1046.View ArticleGoogle Scholar
- Matsufuji S, Inazawa J, Hayashi T, Miyazaki Y, Ichiba T, Furusaka A: Assignment of the human antizyme gene (OAZ) to chromosome 19p13.3 by fluorescence in situ hybridization. Genomics. 1996, 38: 102-104. 10.1006/geno.1996.0601.View ArticlePubMedGoogle Scholar
- Ramos PC, Hockendorff J, Johnson ES, Varshavsky A, Dohmen RJ: Ump1p is required for proper maturation of the 20S proteasome and becomes its substrate upon completion of the assembly. Cell. 1998, 92: 489-499.View ArticlePubMedGoogle Scholar
- Zhu H, Kavsak P, Abdollah S, Wrana JL, Thomsen GH: A SMAD ubiquitin ligase targets the BMP pathway and affects embryonic pattern formation. Nature. 1999, 400: 687-693. 10.1038/23293.View ArticlePubMedGoogle Scholar
- Stroschein SL, Wang W, Zhou S, Zhou Q, Luo K: Negative feedback regulation of TGF-beta signaling by the SnoN oncoprotein [see comments]. Science. 1999, 286: 771-774. 10.1126/science.286.5440.771.View ArticlePubMedGoogle Scholar
- Sun Y, Liu X, Ng-Eaton E, Lodish HF, Weinberg RA: SnoN and Ski protooncoproteins are rapidly degraded in response to transforming growth factor beta signaling. Proc Natl Acad Sci U S A. 1999, 96: 12442-12447. 10.1073/pnas.96.22.12442.PubMed CentralView ArticlePubMedGoogle Scholar
- Lo RS, Massague J: Ubiquitin-dependent degradation of TGF-beta-activated Smad2. Nat Cell Biol. 1999, 1: 472-478. 10.1038/70258.View ArticlePubMedGoogle Scholar
- Ebisawa T, Fukuchi M, Murakami G, Chiba T, Tanaka K, Imamura T: Smurf1 interacts with transforming growth factor-beta type I receptor through Smad7 and induces receptor degradation. J Biol Chem. 2001, 276: 12477-12480. 10.1074/jbc.C100008200.View ArticlePubMedGoogle Scholar
- Kavsak P, Rasmussen RK, Causing CG, Bonni S, Zhu H, Thomsen GH: Smad7 binds to Smurf2 to form an E3 ubiquitin ligase that targets the TGF beta receptor for degradation. Mol Cell. 2000, 6: 1365-1375.View ArticlePubMedGoogle Scholar
- Zhang Y, Chang C, Gehling DJ, Hemmati-Brivanlou A, Derynck R: Regulation of Smad degradation and activity by Smurf2, an E3 ubiquitin ligase. Proc Natl Acad Sci U S A. 2001, 98: 974-979. 10.1073/pnas.98.3.974.PubMed CentralView ArticlePubMedGoogle Scholar
- Lin X, Liang M, Feng XH: Smurf2 is a ubiquitin E3 ligase mediating proteasome-dependent degradation of Smad2 in transforming growth factor-beta signaling. J Biol Chem. 2000, 275: 36818-36822. 10.1074/jbc.C000580200.View ArticlePubMedGoogle Scholar
- Ausubel FM: In Current Protocols in Molecular Biology. Edited by: Janssen K. 1994, New York: John Wiley & Sons;, 1-20.Google Scholar
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