Association of telomere instability with senescence of porcine cells
© Ji et al.; licensee BioMed Central Ltd. 2012
Received: 21 February 2012
Accepted: 10 December 2012
Published: 15 December 2012
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© Ji et al.; licensee BioMed Central Ltd. 2012
Received: 21 February 2012
Accepted: 10 December 2012
Published: 15 December 2012
Telomeres are essential for the maintenance of genomic stability, and telomere dysfunction leads to cellular senescence, carcinogenesis, aging, and age-related diseases in humans. Pigs have become increasingly important large animal models for preclinical tests and study of human diseases, and also may provide xeno-transplantation sources. Thus far, Southern blot analysis has been used to estimate average telomere lengths in pigs. Telomere quantitative fluorescence in situ hybridization (Q-FISH), however, can reveal status of individual telomeres in fewer cells, in addition to quantifying relative telomere lengths, and has been commonly used for study of telomere function of mouse and human cells. We attempted to investigate telomere characteristics of porcine cells using telomere Q-FISH method.
The average telomere lengths in porcine cells measured by Q-FISH correlated with those of quantitative real-time PCR method (qPCR) or telomere restriction fragments (TRFs) by Southern blot analysis. Unexpectedly, we found that porcine cells exhibited high incidence of telomere doublets revealed by Q-FISH method, coincided with increased frequency of cellular senescence. Also, telomeres shortened during subculture of various porcine primary cell types. Interestingly, the high frequency of porcine telomere doublets and telomere loss was associated with telomere dysfunction-induced foci (TIFs). The incidence of TIFs, telomere doublets and telomere loss increased with telomere shortening and cellular senescence during subculture.
Q-FISH method using telomere PNA probe is particularly useful for characterization of porcine telomeres. Porcine cells exhibit high frequency of telomere instability and are susceptible to telomere damage and replicative senescence.
Telomeres consist of (TTAGGG)n repeats and associated proteins at the end of chromosomes in mammalian cells and function in the maintenance of genomic stability to protect the chromosomes from degradation and end-to-end fusion [1, 2]. Telomere sequence is conserved among mammals [3, 4]. Normal human cells, including the stem cells of renewal tissues, show progressive telomere shortening with cell division until a subset of telomeres reach a critically short length, inducing DNA-damage response and replicative senescence or cell aging [5–7].
Mouse cells may have telomere damage signaling pathways different from those of humans . The observed senescence of mouse cells in culture may not be related to telomere shortening, but rather to changing culture condition, such as excessive oxidative stress . It was proposed that the mouse may not be the best animal model for study of human telomere biology, as fundamental differences exist between human and mouse telomere biology . Other mammals, including dogs, primates, and sheep, have also been compared for telomere biology and function [11–13]. Pigs have been considered as an ideal organ provider for xeno-transplantation and also as appropriate large animal models for preclinical tests and study of human diseases, including cardiovascular disease, diabetes, infectious disease, and cancer, and stem cell therapy [14–17], owing to the similarities in anatomy and physiology between pigs and humans . Also, primary porcine cells have been genetically engineered to induce tumors in size similar to those observed clinically, and may provide a robust cancer model for preclinical studies .
Pig telomeres share the conserved TTAGGG sequence of mouse and human telomeres [20, 21]. The terminal restriction fragments (TRFs) from pig cells (9–50 kb) are longer than those of human cells (10–20 kb) but shorter than those of laboratory mice (30–200 kb) [11, 21]. The major quantitative methods available for telomere measurement include length distribution of TRFs by Southern blot, quantitative fluorescence in situ hybridization (Q-FISH) that shows individual telomere lengths of metaphase spreads [22, 23], mean telomere length by quantitative PCR (qPCR) [24, 25], and PCR of single telomere lengths (STELA) . Pig telomeres have been revealed by fluorescence in situ hybridization using human telomere repeat probe (TTAGGG)n  and primed in situ DNA synthesis (PRINS) , but telomere measurement by either method was not quantitative.
TRF measurement by Southern blot was employed to examine telomere lengths in cloned pigs [29, 30]. TRFs show distribution of telomeres in smear gels by Southern blots, and only average telomere length is estimated by this approach. However, it is not the average telomere length but rather the shortest telomere that constitutes telomere dysfunction and that becomes a major determinant of the onset of senescence [31, 32]. Consistently, chromosome arms carrying the shortest telomeres are the first to be unstable . Telomeres were recently found to resemble fragile sites [34, 35]. The shortest telomeres, or fragile telomeres, may reflect DNA-damage response signals in senescent human cells [35, 36]. Thus far, quantitative measurement of telomeres at the level of individual chromosomes has not been performed in porcine cells. Moreover, the precise characteristics of pig telomeres and their roles in cellular senescence and immortalization remain elusive. We sought to measure pig telomeres by comparing three methods, Southern blot, Q-FISH, and qPCR, and to characterize pig telomeres in relevance to cellular senescence during subculture of pig primary cells.
During subculture of various pig cell types, frequencies of telomere signal-free ends and doublets increased, accompanied by telomere shortening (Figure 3D, E). High frequency of telomere signal-free ends seemed to coincide with higher incidence of telomere doublets in pig cells.
We compared three methods for telomere measurement in pig cells. Using telomere Q-FISH method [23, 41], interestingly, we found that pig cells show high incidence of telomere doublets. Pig lymphocytes at metaphase were analyzed by FISH with telomeric DNA probes to identify telomeres at both terminal and interstitial sites, but the method was not sensitive enough to reveal telomere doublets . Telomeres in interphase nuclei of pig ovarian follicles were also measured by FISH with telomeric DNA probes , but the overlapping of telomere signals in interphase nuclei might overestimate the telomere signals. We show here that the Q-FISH method using telomeric PNA probe is very useful in determining both the lengths and the status of pig telomeres.
Telomere qPCR yields T/S ratio and is a time-saving method for relative quantitative measurement of telomeres. In addition, the method only requires a small amount of sample [24, 25]. We slightly modified the telomere amplification conditions by amplification of both telomere and 36B4 primers in one set of reaction. We found a high correlation of T/S ratio measured by qPCR with telomere length measured by Q-FISH in mouse stem cells . The T/S ratio determined by qPCR contained lengths of both terminal and interstitial telomere sequences. Interestingly, telomeric primers for mouse, but not human telomeres, are suitable for pig telomere measurement by qPCR. The reason is unclear, but might relate to higher amplification efficiency for longer telomeres of pig cells. Together, telomere lengths measured by three methods showed strong correlation, proving effective measurement of relative telomere lengths by each method. Telomere structure, loss, and doublets, however, can only be revealed by Q-FISH method.
Telomere lengths of pig skin fibroblasts at early passages show no appreciable differences among individuals. Yet, telomeres shorten significantly during subculture of various pig cell types. Also, human fibroblasts undergo replicative senescence, accompanied by accumulation of short telomeres and loss of telomeric sequences [6, 38, 43], and the accumulated telomeric loss accelerates senescence . Up-regulation of p53 and p53- induced gene, p21, is associated with cell senescence [38, 45, 46]. Likewise, porcine cells show increased expression levels of p53 and p21, along with telomere shorting and cell senescence. Telomere dysfunction, accompanied by cell senescence, has been shown to appear early in human cells [38, 47]. It appears that pig cells undergo senescence in a manner similar to human cells.
Notably, pig cells exhibit telomere doublets at a high incidence. Primary pig cell lines showed approximately 5% doublets, similar to human cells . Telomere doublets often refer to more than one telomeric signal at a single chromatid end . Telomere doublets may indicate fragile telomeres, following damages to telomeres [49–52]. Telomere doublets are indicative of genome instability. Telomere doublets are found in both normal and mutant human cells , and also associated with fragile telomeres and cellular senescence [34, 53]. Increased frequency of telomere doublets during subculture of pig cells also coincides with telomere loss and dysfunction, in association with cellular senescence. Both telomere doublets and telomere loss represent telomere instability, and telomere doublets may lead to telomere shortening and loss under stress conditions. Telomere doublets may provide a marker for cell senescence.
Porcine cells exhibit high frequency of telomere doublets and are susceptible to telomere damage and replicative senescence. Telomere biology of pigs appears to be similar to that of humans. Investigation of telomere dysfunction and senescence using pig cells may complement studies of human biology and medicine.
The use of the animals for this research was approved by the Institutional Animal Care and Use Committee at Nankai University. Porcine (Yorkshire) fibroblasts from fetal (embryonic day 50), newborn (7 or 8 days after birth), and adult (3–4 months) pigs were isolated by a standard tissue-attachment method. The upper layer of pig ear skin was removed, and the remaining tissue was minced into 1 × 1-mm3 pieces, placed to culture dishes, and incubated in Dulbecco’s Modified Eagle Medium (DMEM)(Gibico, USA), containing 10% fetal bovine serum (FBS)(Thermo, USA). Gelatinous bone marrow tissues from fetal femurs and tibias, at embryonic day 50, as well as from newborn piglets were extracted under sterile conditions. Bones were rinsed with DMEM after both ends were cut. The recovered cells were centrifuged, resuspended, and plated in culture dishes. The culture medium containing 15% FBS, was changed every other day, and cells passaged every 3 or 4 days when the cells reached 90% confluence. Human fibroblasts (HEF) were provided by Z. Liu at Sun Yat-Sen University.
Cells were incubated with 0.2–0.3 μg/mL nocodazole (Sigma, St. Louis, MO, USA) for 3 h to enrich the cells in metaphase. Chromosome spreads for different cell types were made using a routine method. Metaphase-enriched cells were subjected to hypotonic treatment in a 75 mM KCl solution, fixed with methanol:glacial acetic acid (3:1), and spread onto clean slides. Telomere FISH and quantification were performed as described previously [22, 23, 41], except that a fluorescein isothiocyanate (FITC)-labeled (CCCTAA) peptide nucleic acid (PNA) probe was used in this study. Telomeres were denatured at 80°C for 3 min and hybridized with telomere PNA probe (0.5 μg/mL) (Panagene, Daejeon, Korea). Chromosomes were stained with 0.5 μg/mL 4',6-diamidino-2-phenylindole (DAPI). Fluorescence signals from chromosomes and telomeres were digitally imaged using a Zeiss microscope with FITC/DAPI filter sets, in combination with AxioCam and AxioVision software 4.6. For quantitative measurement of telomere length, telomere fluorescence intensity was integrated using the TFL-TELO program (a gift kindly provided by P. Lansdorp, Terry Fox Laboratory, Vancouver, Canada). More than 15 metaphase spreads were examined for each cell type.
A modified qPCR method by amplification of both telomeres and the single-copy gene (36B4) within one set of reactions proves to be effective for measurement of telomere length in early embryonic and pluripotent stem cells in mice [37, 54]. DNA samples were extracted from various cell types using the DNeasy Blood & Tissue Kit (Qiagen, Valencia, CA, USA). The average telomere length was measured from total genomic DNA using a real-time PCR assay, as previously described [24, 25, 37], with slight modifications for measurement of pig telomeres using human or mouse telomere primers: human telomeric primers (5′-3′): (hTel) Forward, GGTTTTTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGT; hTel Reverse, TCCCGACTATCCCTATCCCTATCCCTATCCCTATCCCTA; murine telomere (mTel) Forward, CGGTTTGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGGTT; mTel Reverse, GGCTTGCCTTACCCTTACCCTTACCCTTACCCTTACCCT. Primers for the reference control gene (pig 36B4 single-copy gene): forward, TGAAGTGCTTGACATCACCGAGGA; reverse, CTGCAGACATACGCTGGCAACATT. The PCR amplification system for telomeres included a SYBR Green Mix of 12.5 μL, 400 nM forward and reverse telomere primers. The reaction system for the 36B4 gene contained the same amount of SYBR Green mix as telomeres, 400 nM forward primer and 640 nM reverse primer. Samples with equal amounts (35 ng) of DNA were added to 2 adjacent wells. A sufficient quantity of double-distilled water was added to each well to yield a final volume of 25 μL. Both telomeres and the 36B4 gene were amplified under the same conditions. For each PCR reaction, a standard curve was made by serial dilution of known amounts of DNA. All PCR reactions were performed using iCycler iQ real-time PCR detection system (Bio-Rad, Hercules, CA, USA). Pig spleen DNA diluted from 110 to 1.7 ng was amplified for the standard curve. The telomere (T) signal was normalized to the signal from the single-copy (S) gene to generate a T/S ratio indicative of relative telomere length. Equal amounts of DNA (35 ng) were used for each reaction, with at least 3 replicates for each specimen.
Genomic DNA from the different samples was prepared as above and DNA was dissolved in nuclease-free water. The DNA quality was assayed using a spectrophotometer, and the ratio of 260 to 280 was between 1.8 and 2.1. The mean telomere length was determined by mean TRF length analysis using TeloTAGGG Telomere Length Assay Kit (Roche, Mannheim, Germany), according to the protocol provided by the manufacturer, with slight modifications. Each DNA sample (3 μg) was digested with Hin fI and Rsa I overnight. The digested DNA was separated by agarose gel (0.8%) electrophoresis at 5 V/cm in 1× TBE buffer for 4 h. Gels were denatured, neutralized, and transferred to positively charged nylon membranes (Amersham, Oakville, ON, Canada) overnight. The membranes were prehybridized in DIG Easy Hyb (Roche) at 42°C for 45 min, and then hybridized in DIG Easy Hyb containing the telomere probe at 42°C for 3 h. The membranes were washed, blocked, and incubated with Anti-DIG-AP working solution and detection buffer. They were then subjected to chemiluminescence detection according to the manufacturer’s instructions and exposed to X- ray film for 1–5 min. The mean telomere length was calculated using the following formula: TRF = Σ(OD i )/Σ(OD i /L i ), where ODi is the chemiluminescent signal and ODi/Li is the length of the TRF at position i.
Total RNA was isolated from porcine cells by using an RNeasy mini kit (Qiagen). RNA (2 μg) was subjected to cDNA synthesis using M-MLV Reverse Transcriptase (Invitrogen, Grand Island, NY, USA). Real-time quantitative PCR reactions were set up in duplicate with the SYBR Green Master (TOYOBO) and run on the iCycler iQ5 2.0 Standard Edition Optical System (Bio-Rad). Each sample was repeated 3 times and analyzed with β-actin as the internal control. Most primers were designed using the IDT DNA website (http://www.idtdna.com/Home/Home.aspx) as follows: p21 forward, 5′ACCATGTGGACCTGTTGCTGT3′, and reverse, 5′AGAAATCTGTCATGCTGGTCTGCC3′; p53 forward, 5′GGAACAGCTTTGAGGTGCGTGTTT3′, and reverse, 5′AATACTCGCCATCCAGTGGCTTCT3′; β-actin forward, 5′TGCGGCATCCACGAAACTAC3′, and reverse, 5′TTCTGCATCCTGTCGGCGAT3′.
Cells were stained using a senescence kit (Beyotime, C0602, Shanghai, China), according to the manufacturer’s instructions. Cells were fixed with formalin for 15 min at room temperature, washed with PBS 3 times, and incubated at 37°C with β-galactosidase working solution overnight. Samples were mounted, and imaged under a microscope (ECLITSE-TS100, Nikon, Japan). At least 5 pictures were randomly captured for each sample. More than 10,000 cells were counted for quantification of senescent cells.
The P53 protein expression levels were analyzed for cultured pig cells at early and late passages. Primary antibody against P53 (sc-126, Santa Cruz) was used for Western blotting and β-actin (P30002, abmart) served as loading controls. Cells were lysed in lysis buffer plus 1mM PMSF. Protein concentration was quantified by Pierce® BCA Protein Assay Kit (23227 Thermo). The protein samples (20 μg) were separated on 10% SDS-polyacrylamide gels and transferred to a PVDF membrane (0.2 μm Millipore ISEQ00010). After blocking with TBST buffer containing 5% nonfat dry milk, the membrane was incubated with the primary antibodies. After washing and incubation with secondary antibody (ECL anti-rabbit/mouse IgG, NA934/NA931 GE Healthcare), the proteins were detected using chemiluminescent HRP substrate reagent (WBKLS0100, Millipore).
Telomerase activity of pig cells was quantified using TE ELISA Kit (CSB-E06793p, CUSABIO, China) according to the manufacturer’s protocol. 1×106 cells in 300 μl PBS were used for telomerase quantification, and 100 μl Standard, Blank, or Sample added per well, covered with the adhesive strip, and incubated for 2 h at 37°C. Biotin-antibody working solution (100 μl) was added to each well and incubated for 1 h at 37°C. After washing for three times, 100 μl HRP-avidin working solution was added to each well, covered with a new adhesive strip, and incubated for 1 h at 37°C. After washing, 90 μl TMB Substrate was added to each well, and incubated for 15–30 min at 37°C. The optical density of each well was determined using a microplate reader set to 450 nm.
IF-FISH was performed as described previously [34, 40]. Briefly, cells were grown on gelatin-treated cover slips and fixed with 2% paraformaldehyde for 10 min at room temperature. The cells were washed with a blocking solution (1 mg/mL bovine serum albumin, 3% goat serum, 0.1% Triton X 100 and 1 mM EDTA pH 8.0) and incubated with anti-γH2AX (Upstate, 05–636, CA) in blocking solution. The secondary antibody against mouse IgG was labeled with Alexa Flour 594 (Invitrogen). Cells were fixed in 2% paraformaldehyde for 5 min, and FISH was performed using a FITC-(CCCTAA)3 PNA telomere probe (Panagene), as described above. DNA was counterstained with 0.5 μg/L DAPI in Vectashield mounting medium (Vector Laboratories, Burlingame, CA). Fluorescence was detected and imaged using a Zeiss Imager Z1 microscope equipped with an epifluorescence source and lenses.
Percentages were transformed using arcsine transformation. Transformed percentage data and other numbers were analyzed by analysis of variance (ANOVA), and means were compared by Fisher’s protected least-significant difference (PLSD) test using StatView software from SAS Institute Inc. (Cary, NC). Linear relationships and regression analysis were performed using SigmaPlot 8.0 (Systat Software, San Jose, CA, USA). Significant differences were defined as p < 0.05, 0.01, or lower.
This work was supported by MOST National Major Basic Research Program (2009CB941000 and 2011CBA01002).
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